World's Fair 2026
From Tokens to Cells: Foundation Models for Single-Cell Biology - Akram Baharlouei, Altos Labs
Overview
This talk explores the engineering hurdles in developing foundation models specifically for single-cell biology, presented from the viewpoint of a machine learning engineer without a biology background. It delves into the unique challenges and considerations required to adapt large model technologies for biological data analysis.
Who should watch
- AI engineers and researchers interested in applying foundation models to specialized scientific domains.
- Machine learning practitioners facing challenges with complex, high-dimensional biological datasets.
- Builders looking to understand the intersection of AI and life sciences.
Key takeaways
- Adapting foundation models for single-cell biology requires addressing significant data heterogeneity and scale.
- Engineering efforts focus on developing robust methods for processing and modeling sparse, high-dimensional biological data.
- The talk highlights the interdisciplinary nature of building AI for scientific discovery, bridging machine learning expertise with biological questions.
- Challenges include data preprocessing, feature representation, and model interpretability within the biological context.
Notable quotes
Akram Baharlouei discusses the engineering challenges of building foundation models for single-cell biology from a non-biologist’s perspective.
Unofficial community note. Prefer the recording for nuance.